[pytables-users] Failed test in Ubuntu 12.04

[Gabriel Marinello]

Hello,

I installed the newest version using PIP in my laptop. I run the test and
it results in 4 error messages.

Cheers,
Gabriel

-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
PyTables version: 3.2.1.1
HDF5 version: 1.8.4-patch1
NumPy version: 1.9.2
Numexpr version: 2.4.3 (not using Intel's VML/MKL)
Zlib version: 1.2.3.4 (in Python interpreter)
BZIP2 version: 1.0.6 (6-Sept-2010)
Blosc version: 1.4.4 (2015-05-05)
Blosc compressors: blosclz (1.0.2.1), lz4 (1.2.0), lz4hc (1.2.0), snappy
(1.1.1), zlib (1.2.8)
Cython version: 0.15.1
Python version: 2.7.3 (default, Jun 22 2015, 19:33:41)
[GCC 4.6.3]
Platform: Linux-3.2.0-90-generic-x86_64-with-Ubuntu-12.04-precise
Byte-ordering: little
Detected cores: 8
Default encoding: ascii
Default FS encoding: UTF-8
Default locale: (en_GB, UTF-8)
-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=


======================================================================
ERROR: None (tables.tests.test_tables.RecArrayRangeTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/usr/local/lib/python2.7/dist-packages/tables/tests/test_tables.py", line
2169, in test01a_range
self.check_range()
File
"/usr/local/lib/python2.7/dist-packages/tables/tests/test_tables.py", line
2042, in check_range
recarray = table.read(self.start, self.stop, self.step)
File "/usr/local/lib/python2.7/dist-packages/tables/table.py", line 1965,
in read
arr = self._read(start, stop, step, field, out)
File "/usr/local/lib/python2.7/dist-packages/tables/table.py", line 1887,
in _read
self.row._fill_col(result, start, stop, step, field)
File "tables/tableextension.pyx", line 1272, in
tables.tableextension.Row._fill_col (tables/tableextension.c:15021)
ValueError: could not broadcast input array from shape (2) into shape (0)

======================================================================
ERROR: None (tables.tests.test_tables.GetColRangeTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/usr/local/lib/python2.7/dist-packages/tables/tests/test_tables.py", line
2169, in test01a_range
self.check_range()
File
"/usr/local/lib/python2.7/dist-packages/tables/tests/test_tables.py", line
2050, in check_range
column = table.read(self.start, self.stop, self.step, 'var2')
File "/usr/local/lib/python2.7/dist-packages/tables/table.py", line 1965,
in read
arr = self._read(start, stop, step, field, out)
File "/usr/local/lib/python2.7/dist-packages/tables/table.py", line 1887,
in _read
self.row._fill_col(result, start, stop, step, field)
File "tables/tableextension.pyx", line 1272, in
tables.tableextension.Row._fill_col (tables/tableextension.c:15021)
ValueError: could not broadcast input array from shape (2) into shape (0)

======================================================================
ERROR: None (tables.tests.test_tablesMD.RecArrayRangeTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/usr/local/lib/python2.7/dist-packages/tables/tests/test_tablesMD.py",
line 746, in test01a_range
self.check_range()
File
"/usr/local/lib/python2.7/dist-packages/tables/tests/test_tablesMD.py",
line 620, in check_range
recarray = table.read(self.start, self.stop, self.step)
File "/usr/local/lib/python2.7/dist-packages/tables/table.py", line 1965,
in read
arr = self._read(start, stop, step, field, out)
File "/usr/local/lib/python2.7/dist-packages/tables/table.py", line 1887,
in _read
self.row._fill_col(result, start, stop, step, field)
File "tables/tableextension.pyx", line 1272, in
tables.tableextension.Row._fill_col (tables/tableextension.c:15021)
ValueError: could not broadcast input array from shape (2) into shape (0)

======================================================================
ERROR: None (tables.tests.test_tablesMD.GetColRangeTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/usr/local/lib/python2.7/dist-packages/tables/tests/test_tablesMD.py",
line 746, in test01a_range
self.check_range()
File
"/usr/local/lib/python2.7/dist-packages/tables/tests/test_tablesMD.py",
line 629, in check_range
column = table.read(self.start, self.stop, self.step, 'var2')
File "/usr/local/lib/python2.7/dist-packages/tables/table.py", line 1965,
in read
arr = self._read(start, stop, step, field, out)
File "/usr/local/lib/python2.7/dist-packages/tables/table.py", line 1887,
in _read
self.row._fill_col(result, start, stop, step, field)
File "tables/tableextension.pyx", line 1272, in
tables.tableextension.Row._fill_col (tables/tableextension.c:15021)
ValueError: could not broadcast input array from shape (2,2,2) into shape
(0,2,2)

----------------------------------------------------------------------
Ran 5734 tests in 195.698s

FAILED (errors=4, skipped=177)

[Andrea Bedini]

Hi Gabriel,

File "tables/tableextension.pyx", line 1272, in tables.tableextension.Row._fill_col (tables/tableextension.c:15021)
ValueError: could not broadcast input array from shape (2) into shape (0)

this to me looks like https://github.com/PyTables/PyTables/issues/481, it is fixed in the 3.2.2 branch due to be released in a week or so.

Andrea

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